Resources

5 Reconciliations That Disappear When CTMS, CTFM and EDC Share Data

Written by Smit Shah | Oct 12, 2026, 7:59:59 AM

In a Tufts CSDD study of 257 sponsors and CROs, companies used an average of six applications to support each clinical study (Tufts CSDD via GlobeNewswire). Wherever two of those systems hold the same fact, someone has to check that they agree.

In trial finance, that checking has a name: reconciliation. Visits are matched between EDC and CTMS, invoices are matched to budgets, and month-end accruals are matched to what was actually done. Each one takes time, and each one exists because the data lives in more than one place. Here are five that disappear when CTMS, CTFM and EDC share one data model, and one that changes shape.

Reconciliations at a glance

Reconciliation

Why it exists

On one platform

Visits: EDC vs CTMS vs payments

Visits recorded separately in each system

One visit record used by all three

Enrolment counts

Each system counts subjects its own way

One subject record, one count

Budget vs contract after amendments

Fee changes made in several places

Amendment applied once to affected visits

Earned vs accrued at month-end

Accruals estimated from reports

Earned-not-invoiced shown directly

Payments vs visits for sites

Sites match remittances to their own visit logs

Payment status tied to each visit

Site invoices vs proforma

Pass-through costs arrive on the site's own invoice

Still reconciled, but faster, with exceptions routed to people

1. Visits between EDC, CTMS and payments

The most common reconciliation in trial finance is checking that a visit in EDC is also complete in CTMS and has been paid. When all three use the same visit record, the visit is complete everywhere at once, and the payment follows it.

2. Enrolment counts

EDC, CTMS and the finance forecast often show different enrolment numbers on the same day, because each counts screened, randomised and withdrawn subjects differently or updates on a different schedule. A single subject record removes the debate before status meetings.

3. Budgets and contracts after an amendment

After an amendment, the new fees have to reach the site budget, the contract and the payment rules. When they are updated separately, someone has to check they match. Applying the change once, to the affected visits and procedures, removes that check.

4. Month-end accruals

Finance teams estimate accruals by asking clinical teams what work has been done but not yet invoiced. When completed visits create earned amounts automatically, earned-not-invoiced is a figure to read, not a figure to build.

5. Site remittances

Sites match the payments they receive against their own visit records to see what is still owed. When payment status is linked to each visit and visible in a portal, the site can see what is paid and what is pending without its own reconciliation.

What still needs reconciling: site invoices

Pass-through costs, such as travel, local labs or equipment, arrive on the site's own invoice and still need checking against the budget and proforma. What changes is speed: line items can be extracted, classified and compared automatically, with only the exceptions going to a person.

Reconciliation checklist

  • List every reconciliation your team runs each month and who owns it
  • Note which ones exist only because the same data is in two systems
  • Make one visit record the trigger for status and payment
  • Agree one definition of an enrolled subject across teams
  • Apply amendments once, to the affected visits and procedures
  • Use earned-not-invoiced amounts for accruals
  • Route site-invoice exceptions to a named approver

What this means by role

  • Study finance leads: fewer monthly reconciliations, and accruals from data instead of estimates.
  • Clinical operations managers and CTMs: no more confirming visits and enrolment counts for finance.
  • Clinical operations directors: status meetings start from one set of numbers.
  • CRCs and site finance teams: payment status is clear for every visit.
  • QA and auditors: every payment traces to the visit and budget line behind it.

How Cloudbyz approaches this

Cloudbyz CTMS, CTFM and EDC are built natively on Salesforce as one platform, so visits, subjects and budgets share one data model rather than being copied between systems. Completed subject visits generate invoices, amendments are applied to the affected visits and procedures, and sponsors and sites see status through portals.

For site invoices, the Invoice Reconciliation Agent, built on Agentforce, is designed to extract line items from invoice PDFs, classify each line, compare it with the system proforma, calculate variance with a red, amber or green status, detect duplicates and route exceptions to a person with a recommendation. Cloudbyz describes it as turning a 30 to 45 minute reconciliation into seconds; actual time depends on invoice complexity. The Financial Navigator answers questions on payments and invoices, read-only. How many reconciliations go away depends on which modules are in use and how they are configured.

See reconciliation on one platform

Book a demo or visit cloudbyz.com.